Class: Organism

A cellular life form or virus

classDiagram class Organism Part <|-- Organism Organism : comment Organism : id Organism : name Organism : species_name Organism : strain_agnostic_taxid Organism : strain_value

Inheritance

Part
- Organism

Slots

Name	Cardinality and Range	Description	Inheritance
comment	0..1 xsd:string	None	direct
id	1..1 xsd:string	None	direct
name	0..1 xsd:string	None	direct
species_name	0..1 xsd:string	None	direct
strain_agnostic_taxid	0..1 xsd:string	None	direct
strain_value	0..1 xsd:string	None	direct

Usages

used by	used in	type	used
Strain	host_organism	range	Organism
Database	organism_set	range	Organism

Identifier and Mapping Information

Schema Source

from schema: https://example.com/synbio

Mappings

Mapping Type	Mapped Value
self	['synbio:Organism']
native	['synbio:Organism']
exact	['OBI:0100026']

LinkML Source

Direct

name: Organism
description: A cellular life form or virus
from_schema: https://example.com/synbio
exact_mappings:
- OBI:0100026
rank: 1000
is_a: Part
slots:
- comment
- id
- name
- species_name
- strain_agnostic_taxid
- strain_value
slot_usage:
  id:
    name: id
    domain_of:
    - PartsSequence
    - Strain
    - Modification
    - Organism
    - Person
    - PartsSequence
    - Strain
    - Modification
    - Organism
    - Person
    pattern: ^organism:-?\d+$

Induced

name: Organism
description: A cellular life form or virus
from_schema: https://example.com/synbio
exact_mappings:
- OBI:0100026
rank: 1000
is_a: Part
slot_usage:
  id:
    name: id
    domain_of:
    - PartsSequence
    - Strain
    - Modification
    - Organism
    - Person
    - PartsSequence
    - Strain
    - Modification
    - Organism
    - Person
    pattern: ^organism:-?\d+$
attributes:
  comment:
    name: comment
    from_schema: https://example.com/synbio
    exact_mappings:
    - NCIT:C25393
    rank: 1000
    alias: comment
    owner: Organism
    domain_of:
    - Organism
    range: string
  id:
    name: id
    from_schema: https://example.com/synbio
    rank: 1000
    identifier: true
    alias: id
    owner: Organism
    domain_of:
    - PartsSequence
    - Strain
    - Modification
    - Organism
    - Person
    - PartsSequence
    - Strain
    - Modification
    - Organism
    - Person
    range: string
    pattern: ^organism:-?\d+$
  name:
    name: name
    from_schema: https://example.com/synbio
    rank: 1000
    alias: name
    owner: Organism
    domain_of:
    - Strain
    - Organism
    range: string
  species_name:
    name: species_name
    from_schema: https://example.com/synbio
    rank: 1000
    alias: species_name
    owner: Organism
    domain_of:
    - Organism
    range: string
  strain_agnostic_taxid:
    name: strain_agnostic_taxid
    from_schema: https://example.com/synbio
    rank: 1000
    alias: strain_agnostic_taxid
    owner: Organism
    domain_of:
    - Organism
    range: string
  strain_value:
    name: strain_value
    from_schema: https://example.com/synbio
    rank: 1000
    alias: strain_value
    owner: Organism
    domain_of:
    - Organism
    range: string